# Config file for PhysioMonitor
log-filename: SurgicalLog.txt
autosave-log: yes
record-root: .  # the folder in which the log file will be stored
create-record-folder: yes  # whether to create the folder in which the data will be saved
record-folder-name-format: '%Y_%m_%d'  # the format used to create the record folder for each experiment
print-trend-data: yes
print-trend-data-period: 30  # in seconds
timer-sound-file: media/beep3x6.wav  # the sound file used when a timer expires

# Data acquisition
comedi:
  device: /dev/comedi0  # device name
  sub-device: 0
  sample-rate: 1000  # in Hz
  channels:
  # following this line is a series of sections describing each channel
#    - chan-1:
#      channel-id: 0  # the comedi channel number
#      gain: 0  # the gain of the board
#      ref: comedi.AREF_GROUND  # reference
#      window-size: 30.  # in secs. The length of the trace shown on screen
#      remanence: 5  # the number of successive traces displayed on screen
#      line-color: 'b'  # the color of the trace
#      line-width: 2.  # the thickness of the line
#      label: "Channel 1"  # the name displayed on top of the graph
#      units: "V"  # the unit of the measurement
#      scale: 1.0  # scaling to convert measurement from V to real unit
#      offset: 0.0  # scaling to convert measurement from V to real unit
#      trigger-mode: 0  # valid values are: AUTO = 0
#                       #                   RISINGTHRESHOLD = 1
#                       #                   FALLINGTHRESHOLD = 2
#      auto-define-threshold: yes  # whether to define the threshold value automatically
#      threshold-window: 30.  # the window of time used for threshold calculation
#      relative-threshold-level: 0.75  # the position of the threshold with respect to the peak-2-peak amplitude of the signal
#      threshold-level: 0  # the absolute threshold level in case we don't want it to me calculated automatically
#      autoscale: yes  # adjust the y-scale automatically
#      ymin: 0.  # in case autoscale is off, the y-value at the bottom of the axes
#      ymax: 1.  # in case autoscale is off, the y-value at the top of the axes
#      trend-ymin: 0.  # the y-value at the bottom of the trend (right) axes
#      trend-ymax: 1.  # the y-value at the top of the trend (right) axes
#      trend-width: 1800.  # this is the duration over which the trend data are kept and plotted
#      trend-period: 30.   # this is the period between trend measurements and therefore used for averaging
#      trend-function: 'get_HR'
#      trend-function-args: {}
#      trend-format: '%.2f'
#      trend-units: 'bpm'
#      alarm-enabled: yes
#      alarm-low: 0.  # values under this threshold will trigger the alarm
#      alarm-high: 1.  # values above this threshold will trigger the alarm
#      alarm-sound-file: media/sound.wav  # the sound file to use for the alarm
    - chan-1:  # EKG
      channel-id: 0  # the comedi channel number
      gain: 0  # the gain of the board
      ref: 0   # reference
      window-size: 1.  # in secs. The length of the trace shown on screen
      remanence: 3  # the number of successive traces displayed on screen
      line-color: 'r'  # the color of the trace
      line-width: 2.  # the thickness of the line
      label: "EKG"  # the name displayed on top of the graph
      units: "V"  # the unit of the measurement
      scale: 1.0  # scaling to convert measurement from V to real unit
      offset: 0.0  # scaling to convert measurement from V to real unit
      trigger-mode: 1
      auto-define-threshold: yes
      threshold-window: 1.
      relative-threshold-level: 0.75
      threshold-level: 0
      autoscale: yes
      ymin: 0.
      ymax: 1.
      trend-ymin: 250.
      trend-ymax: 650.
      trend-width: 1800.  # this is the duration over which the trend data are kept and plotted
      trend-period: 1.   # this is the period between trend measurements and therefore used for averaging
      trend-function: 'get_HR'
      trend-function-args: {}
      trend-format: '%.0f'
      trend-units: 'bpm'
      alarm-enabled: yes
      alarm-low: 300.
      alarm-high: 600.
      alarm-sound-file: media/beep1.wav
#    - chan-2:  # Lung Pressure
#      channel-id: 1  # the comedi channel number
#      gain: 0  # the gain of the board
#      ref: 0  # reference
#      window-size: 15.  # in secs. The length of the trace shown on screen
#      remanence: 3  # the number of successive traces displayed on screen
#      line-color: 'b'  # the color of the trace
#      line-width: 2.  # the thickness of the line
#      label: "Lung Pressure"  # the name displayed on top of the graph
#      units: "cmH2O"  # the unit of the measurement
#      scale: 1.0  # scaling to convert measurement from V to real unit
#      offset: 0.0  # scaling to convert measurement from V to real unit
#      trigger-mode: 0
#      auto-define-threshold: yes
#      threshold-window: 1.
#      relative-threshold-level: 0.75
#      threshold-level: 0
#      autoscale: no
#      ymin: 0.
#      ymax: 20.
#      trend-ymin: 0.
#      trend-ymax: 20.
#      trend-width: 1800.  # this is the duration over which the trend data are kept and plotted
#      trend-period: 5.   # this is the period between trend measurements and therefore used for averaging
#      trend-function: 'get_lastPeakValue'
#      trend-function-args: {}
#      trend-format: '%.1f'
#      trend-units: 'cmH2O'
#      alarm-enabled: no
#      alarm-low: 0.
#      alarm-high: 20.
#      alarm-sound-file: media/beep2.wav
#    - chan-3:  # PCO2
#      channel-id: 2  # the comedi channel number
#      gain: 0  # the gain of the board
#      ref: 0  # reference
#      window-size: 15.  # in secs. The length of the trace shown on screen
#      remanence: 3  # the number of successive traces displayed on screen
#      line-color: 'b'  # the color of the trace
#      line-width: 2.  # the thickness of the line
#      label: "PCO2"  # the name displayed on top of the graph
#      units: "%"  # the unit of the measurement
#      scale: 1.0  # scaling to convert measurement from V to real unit
#      offset: 0.0  # scaling to convert measurement from V to real unit
#      trigger-mode: triggerTypes.AUTO
#      auto-define-threshold: yes
#      threshold-window: 1.
#      relative-threshold-level: 0.75
#      threshold-level: 0
#      autoscale: no
#      ymin: 0.
#      ymax: 6.
#      trend-ymin: 0.
#      trend-ymax: 6.
#      trend-width: 1800.  # this is the duration over which the trend data are kept and plotted
#      trend-period: 5.   # this is the period between trend measurements and therefore used for averaging
#      trend-function: 'get_lastPeakValue'
#      trend-function-args: {}
#      trend-format: '%.1f'
#      trend-units: '%'
#      alarm-enabled: no
#      alarm-low: 3.
#      alarm-high: 5.5
#      alarm-sound-file: media/beep3.wav
#    - chan-4:  # Temperature
#      channel-id: 3  # the comedi channel number
#      gain: 0  # the gain of the board
#      ref: 0  # reference
#      window-size: 30.  # in secs. The length of the trace shown on screen
#      remanence: 1  # the number of successive traces displayed on screen
#      line-color: 'c'  # the color of the trace
#      line-width: 2.  # the thickness of the line
#      label: "Temperature"  # the name displayed on top of the graph
#      units: "°C"  # the unit of the measurement
#      scale: 1.0  # scaling to convert measurement from V to real unit
#      offset: 0.0  # scaling to convert measurement from V to real unit
#      trigger-mode: triggerTypes.AUTO
#      auto-define-threshold: yes
#      threshold-window: 1.
#      relative-threshold-level: 0.75
#      threshold-level: 0
#      autoscale: no
#      ymin: 36.
#      ymax: 39.
#      trend-ymin: 36.
#      trend-ymax: 39.
#      trend-width: 1800.  # this is the duration over which the trend data are kept and plotted
#      trend-period: 30.   # this is the period between trend measurements and therefore used for averaging
#      trend-function: 'get_avg'
#      trend-function-args: {}
#      trend-format: '%.1f'
#      trend-units: '°C'
#      alarm-enabled: yes
#      alarm-low: 36.5
#      alarm-high: 37.5
#      alarm-sound-file: media/beep4.wav

# syringe pump
pump:
  enabled: yes
  com-port: /dev/ttyS0
  baud-rate: 19200
  device-id: 0